PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00000086_a.1.g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 830aa    MW: 94437.7 Da    PI: 9.5229
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00000086_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR186.63.8e-2732120290
                              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwe 77 
                                       fYneYA+++GFsvrk++  k+k++ge+t+r + Cskeg+r ++k++ + ++++raetrtgC+a++ +k+++  +k++
  FANhyb_icon00000086_a.1.g00001.1  32 FYNEYARKMGFSVRKEQVVKNKKTGEVTSRIYSCSKEGYRPKDKRD-KLTKNPRAETRTGCEAQMGIKLNRcINKFV 107
                                       9*****************************************9999.99**************************** PP

                              FAR1  78 vtkleleHnHela 90 
                                       v+++++ HnH+l+
  FANhyb_icon00000086_a.1.g00001.1 108 VYDFREAHNHALV 120
                                       ***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.6E-2332120IPR004330FAR1 DNA binding domain
PfamPF105511.1E-6242279IPR018289MULE transposase domain
PROSITE profilePS509668.963491527IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 830 aa     Download sequence    Send to blast
ITNIGGESSL ADTSCKPKFG MEFDSEEAAY IFYNEYARKM GFSVRKEQVV KNKKTGEVTS  60
RIYSCSKEGY RPKDKRDKLT KNPRAETRTG CEAQMGIKLN RCINKFVVYD FREAHNHALV  120
SEECAYMLRS QRGVSTPQGS ELDLVCDSGV GLKECYELMG RQAGGRESLG YIKQDLKNYL  180
RSRRQKQLAF GEAGSLLSYF QKQQLENPSF FHVVQLDSEE QITNVFWADA KMILDYGQFG  240
DVVSFDTTYR TNKDNRPLGV FVGFNHHREV IIFGAALMMQ QWRKAISVVM PDTYHRLCIW  300
HIMQNAMKKV NHVFRSRTGV HKVLSKFIDS YEEEDEFLAA WDAMLTEYNV HGDEWFKRIF  360
EVRRKWAYAY VRGQWCAGLQ TTQISESING DLKDYLQSDH NLVEFFKHFE RVVNDKRYKE  420
LEAEYALCQK IPQVQRPIKM LIEAGNVYTK IIFEEFQNEF VSALDFYIKT TVDTGEDIVY  480
TVGDLDTSKE FRVIRKKSDN YVSCCCKLFE MNGVLCGHAI KILREVMNVK VIPSEYILNR  540
WTRKARSNSV KDMHGRDIQV DTKLQQTTWY RSLCSIFTKI SSRGAESKET YEVAFEHANK  600
LRTTIEEMLS SKRDGTNHEK DDQGSAPITE DTCVQAKGFR KRGGSRGRKR LTSQLERAYM  660
RKLAQMRQLL GKKGCSDADV QENGSKTGRQ ASGGRKNSET TSRPAQSSKE VIANISTDNV  720
ADVQANGSKR RRQASGGRKS TKTTSQTSPS SKEVAANIST DNVADVQANG SKRRRQASGG  780
RKSTKTTSQT SPSSKDVGKV DNLIQQASQQ HPTGHLESEH VQALNKTVGV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011468393.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLM5VUD00.0M5VUD0_PRUPE; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-113FAR1-related sequence 5